Sequence comparison chao kun mao zhang louxin. Sequence comparison : theory and methods 2019-03-03

Sequence comparison chao kun mao zhang louxin Rating: 7,4/10 1219 reviews

9781849967822: Sequence Comparison: Theory and Methods (Computational Biology)

sequence comparison chao kun mao zhang louxin

This chapter is divided into eight sections. The book is written for readers with little or no knowledge of biology, algorithms and probability. An example is used to illustrate the tabular computation for computing the optimal alignment score as well as the backtracking procedure for delivering an optimal global alignment. Useful appendices are provided for basic concepts in molecular biology, primer in statistics and software for sequence alignment. It finds many applications in computational genomics and molecular evolution.

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Sequence comparison : theory and methods

sequence comparison chao kun mao zhang louxin

Series Title: Responsibility: Kun-Mao Chao, Louxin Zhang. This book gives a complete in-depth treatment of the study of sequence comparison. This chapter is divided into five sections. It focuses on algorithms and techniques, as well as discusses the theory. For many applications of multiple alignment, more efficient heuristic methods are often required.

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Sequence Comparison

sequence comparison chao kun mao zhang louxin

A comprehensive introduction is followed by a focus on alignment algorithms and techniques, proceeded by a discussion of the theory. This easy-to-follow text examines alignment methods and techniques, features a new issue of sequence comparison the spaced-seed technique , addresses several new flexible strategies for coping with various scoring schemes, and covers the theory on the significance of high-scoring segment pairs between two unalignment sequences. A comprehensive introduction is followed by a focus on alignment algorithms and techniques, proceeded by a discussion of the theory. Contents: Introduction; Basic Algorithmic Techniques; Pairwise Sequence Alignment; Homology Search Tools; Multiple Sequence Alignment; Anatomy of Spaced Seeds; Local Alignment Statistics; Scoring Matrices. Biomolecular sequence comparison is the origin of bioinformatics. It starts with a brief introduction in Section 3. Homology Search Tools Chapter 5.

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Sequence comparison : theory and methods in SearchWorks catalog

sequence comparison chao kun mao zhang louxin

It is also among the most important and demanding tasks in computational biology. Pairwise alignment is often used to reveal similarities between sequences, determine the residue-residue correspondences, locate patterns of conservation, study gene regulation, and infer evolutionary relationships. Today, powerful sequence comparison methods, together with comprehensive biological databases, have changed the practice of molecular biology and genomics. From the Back Cover: Biomolecular sequence comparison is the origin of bioinformatics. Bibliography Includes bibliographical references p.

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Sequence comparison : theory and methods (eBook, 2009) [acpltd.co.uk]

sequence comparison chao kun mao zhang louxin

Today, powerful sequence comparison methods, together with comprehensive biological databases, have changed the practice of molecular biology and genomics. Today, powerful sequence comparison methods, together with comprehensive biological databases, have changed the practice of molecular biology and genomics. Features: · Presents a rigorous yet reader-friendly text on the algorithmic techniques and mathematical foundations of sequence alignment and homology search · Offers a tutorial to aid all levels of readers · Covers the basic algorithms and methods for sequence alignment · Introduces popular homology search programs · Familiarizes readers with multiple sequence alignment · Deals with the Karlin-Altschul statistics of optimal local alignment scores · Discusses substitution matrices · Provides end-of-chapter bibliographic notes and further reading suggestions that report related work and recent progresses Based on lectures given to students studying bioinformatics and mathematics, this state-of-the-art study of sequence alignment and homology search is an ideal resource and toolkit for undergraduates and will appeal to biologists who wish to know how to use homology search tools more intelligently. This chapter is divided into five sections. The statistics of local similarity scores are far more complicated than what we shall discuss in this chapter. Relevant patents have been discussed on the topic.

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Sequence comparison : theory and methods (eBook, 2009) [acpltd.co.uk]

sequence comparison chao kun mao zhang louxin

Anatomy of Spaced Seeds Chapter 7. Our discussion focuses on protein sequences for two reasons. Useful appendices are provided for basic concepts in molecular biology, primer in statistics and software for sequence alignment. Useful appendices are provided for basic concepts in molecular biology, primer in statistics and software for sequence alignment. This in-depth, state-of-the-art study of sequence alignment and homology search, covers the full spectrum of the field - from alignment methods to the theory of scoring matrices and alignment score statistics. The book examines alignment methods and techniques, features a new issue of sequence comparison - the spaced seed technique, addresses several new flexible strategies for coping with various scoring schemes, and covers the theory on the significance of high-scoring segment pairs between two unalignment sequences. Useful appendices on basic concepts in molecular biology, primer in statistics and software for sequence alignment are included in this reader-friendly text, as well as chapter-ending exercise and research questions A state-of-the-art study of sequence alignment and homology search, this is an ideal reference for advanced students studying bioinformatics and will appeal to biologists who wish to know how to use homology search tools.

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Sequence comparison : theory and methods

sequence comparison chao kun mao zhang louxin

Softcover reprint of hardcover 1st ed. Book Description Springer London Ltd, United Kingdom, 2010. Our aim is to present the key ideas in the work of Karlin and Altschul on optimal ungapped local alignment scores and its generalizations to gapped local alignment. Useful appendices are provided for basic concepts in molecular biology, primer in statistics and software for sequence alignment. Today, powerful sequence comparison methods, together with comprehensive biological databases, have changed the practice of molecular biology and genomics.

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Sequence Comparison : Kun

sequence comparison chao kun mao zhang louxin

Useful appendices on basic concepts in molecular biology, primer in statistics and software for sequence alignment are included in this reader-friendly text, as well as chapter-ending exercise and research questionsA state-of-the-art study of sequence alignment and homology search, this is an ideal reference for advanced students studying bioinformatics and will appeal to biologists who wish to know how to use homology search tools. The E-mail message field is required. An exact multiple alignment algorithm is given for such a problem. The book examines alignment methods and techniques, and features a new issue of sequence comparison. This book covers the spectrum of the field - from alignment methods to the theory of scoring matrices and alignment score statistics. This book gives a complete in-depth treatment of the study of sequence comparison. Aligning simultaneously several sequences is among the most important problems in computational molecular biology.

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